A
SummarizedExperiment
object containing DIA proteomics data from a UPS1-spiked E. coli proteins,
processed using both Spectronaut and ScaffoldDIA separately, then merged.
Format
An instance of the
SummarizedExperiment
class with the following assays:
- norm
This assay includes log2 protein intensities calculated by averaging the peptides derived from the same protein
The object also contains colData and rowData:
- colData
A DataFrame with metadata for samples.
- rowData
A DataFrame with metadata for proteins.
The colData contains the following columns:
- SampleID
Unique identifier for each sample.
- Conc
Experimental condition or group for each sample , representing different conc. of UPS1-spiked proteins.
- tool
software tool used, Spectronaut or ScaffoldDIA.
- fake.batch
A fake digestion batch.