A
SummarizedExperiment
object containing DIA proteomics data from a UPS1-spiked E. coli proteins,
processed using both Spectronaut and ScaffoldDIA separately, then merged.
An instance of the
SummarizedExperiment
class with the following assays:
This assay includes log2 protein intensities calculated by averaging the peptides derived from the same protein
The object also contains colData and rowData:
A DataFrame with metadata for samples.
A DataFrame with metadata for proteins.
The colData contains the following columns:
Unique identifier for each sample.
Experimental condition or group for each sample , representing different conc. of UPS1-spiked proteins.
software tool used, Spectronaut or ScaffoldDIA.
A fake digestion batch.
Generated with both spectronaut and ScaffoldDIA separately. using a mixed mode acquisition method and FASTA mode for demonstration purposes.
Gotti, C., Roux-Dalvai, F., Joly-Beauparlant, C., Mangnier, L., Leclercq, M., & Droit, A. (2022). DIA proteomics data from a UPS1-spiked E.coli protein mixture processed with six software tools. In Data in Brief (Vol. 41, p. 107829). Elsevier BV. https://doi.org/10.1016/j.dib.2022.107829